rs30892555 SNP Detail

Summary

• ID
  rs30892555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136057490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGAGGGA GGGGGAACAG
  TTTAGGTAAA AACACATTAT CTTTCAGGAG AGCTAAGCCT GTTGCTTGTG GCACCCCCGG
  GCAAAGCTGG GCCAATCCAG CTCCCTTCCC CACAGGCACG CCCTTAGAGG AATCCCTTAG
  AGGAATCGGG ACGCCTAGAA CCACTTGCAG AAGTCCAGAT CTTCTGTGTG TTGCTTATGA
  R
  ACTATTTCCC CACTTGCAAA ATTGGGGGTA GGGGAGAAGG CTAGAACCTG GCTCATAAGG
  TTAGGAGAAC AAACAAGAAC AAAAGCACCA AGTACCTCCC CGTGTAAGCA CCGCTCAGCT
  CTCCACATCC TCCTTTTGTT AGAAGACAGG GAGCAGCGTC CCAATTTCCC AACACTGTCT
  CTTGCTCTAA GGAATTTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49681403	NES12980388	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30892555					SNP	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681403	NES12980388	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136057490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	1365 bp proximal
Gm15850	predicted gene 15850	within coordinates
Kif21b	kinesin family member 21B	1637 bp upstream
Rr396320	regulatory region 396320	1358 bp upstream
Rr419367	regulatory region 419367	951 bp distal
Rr419368	regulatory region 419368	253 bp proximal
Rr419369	regulatory region 419369	1421 bp proximal
Rr419370	regulatory region 419370	1646 bp proximal
Tssr9041	transcription start site region 9041	1611 bp upstream
Tssr9042	transcription start site region 9042	1630 bp upstream
Tssr9043	transcription start site region 9043	1659 bp upstream
Tssr9044	transcription start site region 9044	1691 bp upstream
Tssr13914	transcription start site region 13914	1423 bp downstream