rs30892556 SNP Detail

Summary

• ID
  rs30892556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136057367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAGCTC TGGTGGCATT
  TCCCAGCAGC GGAGCTCTGA GTCAGAAGGT CACCTACTGC TGGAAGTCTG AGCAGACCTA
  TGGCAAACAG GAAGCTAGAG TTAAGTACCA AAGAAGTCCA GGGATGGGAG GGAGGGGGAA
  CAGTTTAGGT AAAAACACAT TATCTTTCAG GAGAGCTAAG CCTGTTGCTT GTGGCACCCC
  Y
  GGGCAAAGCT GGGCCAATCC AGCTCCCTTC CCCACAGGCA CGCCCTTAGA GGAATCCCTT
  AGAGGAATCG GGACGCCTAG AACCACTTGC AGAAGTCCAG ATCTTCTGTG TGTTGCTTAT
  GAGACTATTT CCCCACTTGC AAAATTGGGG GTAGGGGAGA AGGCTAGAAC CTGGCTCATA
  AGGTTAGGAG AACAAACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49681404	NES12980387	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30892556					SNP	T	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681404	NES12980387	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136057367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	1488 bp proximal
Gm15850	predicted gene 15850	within coordinates
Kif21b	kinesin family member 21B	1760 bp upstream
Rr396320	regulatory region 396320	1481 bp upstream
Rr419367	regulatory region 419367	828 bp distal
Rr419368	regulatory region 419368	376 bp proximal
Rr419369	regulatory region 419369	1544 bp proximal
Rr419370	regulatory region 419370	1769 bp proximal
Tssr9041	transcription start site region 9041	1734 bp upstream
Tssr9042	transcription start site region 9042	1753 bp upstream
Tssr9043	transcription start site region 9043	1782 bp upstream
Tssr9044	transcription start site region 9044	1814 bp upstream
Tssr13914	transcription start site region 13914	1546 bp downstream