rs30893297 SNP Detail

Summary

• ID
  rs30893297
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51343005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTTTGC TCGTGCCTTA
  TACTCACATA TATCCAATAT AACCCATGGT GTTAAGCGCA TCCCATCCAA GGGAAGAAAG
  AACCCACTGC TCACAGCACT GATGGCTTGG TTCTCCCAGA TTCTATCCCC TGGAACTTAT
  GCATTACATG TATTCAGATA GTATCTCAAC GATTATAGAG AGCCTTTTCT GTCCAAGCTG
  W
  CTCATTCCAG TCCTCTAACA CCCCTTGAGA CCAATTCTGC CACTGTATTT AGAAGCTTTG
  AGTTAAAGGA TTTGACGACC ACAAAAAACC AAAACCAAAA CCAAAAACAA AAACCCAGTG
  GAAGATCTCA GACAAAAATC CAACTGGACG GGCTACTCAC AAAAGGTGTT ACCCACTTCG
  TTATATATAC TTTCTGTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss49182633	NES12492260	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	T	A			T	A
ss139474646	ENSMUSSNP4005882	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A					T
ss324621069	CHEV_14_51725223	CHEVERUD	SCREENING_POP	f	SNP								A			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30893297					SNP	A	A	A	A	T	A	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182633	NES12492260	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51343005 () rs orientation: forward

Symbol	Name	Function Class
Rnase4	ribonuclease, RNase A family 4	within coordinates
Rr288976	regulatory region 288976	1605 bp distal
Rr288977	regulatory region 288977	405 bp distal
Rr295428	regulatory region 295428	621 bp proximal
Rr299307	regulatory region 299307	1814 bp distal
Tssr125402	transcription start site region 125402	659 bp downstream
Tssr125403	transcription start site region 125403	507 bp downstream
Tssr125404	transcription start site region 125404	367 bp downstream
Tssr125405	transcription start site region 125405	140 bp downstream
Tssr125406	transcription start site region 125406	63 bp downstream
Tssr128409	transcription start site region 128409	141 bp upstream
Tssr128410	transcription start site region 128410	121 bp upstream