rs30893303 SNP Detail

Summary

• ID
  rs30893303
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51342445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGC AATGACAACT ACTGCAACGT
  K
  ATGATGCAGA GACGGAAGAT GACTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	LG/J	SM/J
ss49182639	NES12492257	PERLEGEN	MM_PANEL2	f	SNP		T	T	G
ss139474634	ENSMUSSNP3609529	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324621065	CHEV_14_51724663	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	LG/J	SM/J
rs30893303					SNP	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182639	NES12492257	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51342445 () rs orientation: forward

Symbol	Name	Function Class
Rnase4	ribonuclease, RNase A family 4	within coordinates
Rr288976	regulatory region 288976	1045 bp distal
Rr288977	regulatory region 288977	within coordinates
Rr295428	regulatory region 295428	1181 bp proximal
Rr299307	regulatory region 299307	1254 bp distal
Tssr125402	transcription start site region 125402	99 bp downstream
Tssr125403	transcription start site region 125403	within coordinates
Tssr125404	transcription start site region 125404	175 bp upstream
Tssr125405	transcription start site region 125405	340 bp upstream
Tssr125406	transcription start site region 125406	424 bp upstream
Tssr128409	transcription start site region 128409	388 bp downstream
Tssr128410	transcription start site region 128410	425 bp downstream