rs30893406 SNP Detail

Summary

• ID
  rs30893406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135979657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGTGTGT GTGTGTGTGT GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGG GAGGGAGAGG TCGCTGGTGC
  Y
  CATTGGCTTC CTTGACAGCG AGTGATCACC TCCCCTCTCC CACCCTTCAG TCTCTTCTGG
  ACTTAACGCC TCCCCCACCC CAAGACTTGT AAGCTTCTAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss49681905	NES12982386	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs30893406					SNP	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681905	NES12982386	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135979657 () rs orientation: forward

Symbol	Name	Function Class
Ascl5	achaete-scute family bHLH transcription factor 5	549 bp downstream
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	892 bp upstream
Cpgi803	CpG island 803	156 bp distal
Rr419345	regulatory region 419345	1105 bp distal
Rr419346	regulatory region 419346	671 bp distal
Tssr9037	transcription start site region 9037	835 bp upstream
Tssr9038	transcription start site region 9038	852 bp upstream
Tssr9039	transcription start site region 9039	885 bp upstream
Tssr9040	transcription start site region 9040	1027 bp upstream