rs30893546 SNP Detail

Summary

• ID
  rs30893546
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101830992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA CTAGAGAGAA ATAAATTCCC
  K
  TGGATGGAAA GCCCCTTTAA TAGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45476821	mCV23580693	ABI	CRAMUS_MOUSE	f	SNP		T	T					G		G
ss60429030	NES15933182	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	G	T		G	G	T	T		G	T	T	G		T
ss320853500	CHEV_3_101727599	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30893546					SNP	T	T	T	T	T	G	T	G	G	G	T	T	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60429030	NES15933182	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101830992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13622	CpG island 13622	84 bp proximal
Rr76960	regulatory region 76960	within coordinates
Slc22a15	solute carrier family 22 (organic anion/cation transporter), member 15	within coordinates
Tssr34811	transcription start site region 34811	520 bp downstream
Tssr34812	transcription start site region 34812	604 bp downstream
Tssr34813	transcription start site region 34813	702 bp downstream
Tssr34814	transcription start site region 34814	744 bp downstream
Tssr34815	transcription start site region 34815	792 bp downstream
Tssr34816	transcription start site region 34816	832 bp downstream
Tssr34817	transcription start site region 34817	848 bp downstream
Tssr34818	transcription start site region 34818	953 bp downstream