rs30893829 SNP Detail

Summary

• ID
  rs30893829
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7430028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TGAAAATGAG TGCAGAGATG
  M
  ACTAAGCTGT CTCAAATTTC AAGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45476138	mCV23345009	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C	C
ss134555731	ENSMUSSNP5334094	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30893829					SNP	C	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7430028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	1314 bp proximal
Pkia	protein kinase inhibitor, alpha	1701 bp upstream
Rr573236	regulatory region 573236	187 bp proximal
Rr573237	regulatory region 573237	1212 bp proximal
Rr573238	regulatory region 573238	1713 bp proximal
Tssr814	transcription start site region 814	1689 bp upstream
Tssr28292	transcription start site region 28292	1621 bp upstream
Tssr28293	transcription start site region 28293	1630 bp upstream
Tssr28294	transcription start site region 28294	1705 bp upstream
Tssr28295	transcription start site region 28295	1734 bp upstream