rs30894112 SNP Detail

Summary

• ID
  rs30894112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135937536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATGAAGT AGTAAGGAGA
  TAATTTTATG GCTGGGGGGG TGGTCACCAC AATATAAGGA ACTATATTAA AGGCATTATA
  TCACAGCATT AAGAAGGTGT AAACCGCTGA TCTAGATAGA ATTTGTTTTA ATTTAGCCAT
  TAGGCTCTAA GCTTTGTTAA GTCACACCAA GGTCAAGTGA GCTTGCTTAT TCACTCTTAT
  Y
  AGCCACATTA TACTGGACTA TCCACCGATG CATCCTCCAC TATTCACCCC TTGTATTTAC
  GTAAGTGGGA AACAGACTCA GCCTTCATTT CAATAATGCA TTTTTTTAAA CTGATGTTCT
  CTTTTCTTGT ATTCTTCTTA TCCCTTCTAA TTGTGGTTTG GATCAGAAAT GTCCCCGACA
  GGCTTCTTAT TCAATGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49682238	NES12983715	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30894112					SNP	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682238	NES12983715	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135937536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	1902 bp distal
Rr12652	regulatory region 12652	265 bp proximal
Rr19440	regulatory region 19440	within coordinates
Rr28609	regulatory region 28609	935 bp distal
Rr30723	regulatory region 30723	666 bp proximal
Rr372097	regulatory region 372097	146 bp downstream
Tmem9	transmembrane protein 9	within coordinates