rs30894162 SNP Detail

Summary

• ID
  rs30894162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51341115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAACAA TGTTTATTTG
  CTCATGTCAA TCAACCTGCA AGTCAGTCTG AGGACTGGCC ACCAGATGGC AGCACCTCCT
  AGCCATTCTG CAGGAAAGTA ACTGGCCATG CCTTTATTAT CCTGTTTTGT TTGTTTAAAT
  AATATATTTA TTAATCCTTT AAGAATTTCA TACAGTATAT TTGATCATCT TCACTTTCCT
  Y
  TCTCTATTCT TCCCAGATCT GTCCCCCACT ATCCCACCCA TTTACCTTCA TGACCTCCCT
  TTTTATTTTT TAAAACTCAT TGTGTCCAAA TACTCTTCTG CCCAAATACT CTTCTGCCCA
  AATACTCTTG GGTGTGGGGT TGCCTTCTGG AGCATGGTCA ACCTACTGGA AGTCACACAC
  CCTTAAAGAA AGCTGACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	LG/J	MOLF/EiJ	SM/J
ss49182649	NES12492531	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T		C
ss324621053	CHEV_14_51723333	CHEVERUD	SCREENING_POP	f	SNP						T		C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	LG/J	MOLF/EiJ	SM/J
rs30894162					SNP	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182649	NES12492531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51341115 () rs orientation: forward

Symbol	Name	Function Class
Ang	angiogenin, ribonuclease, RNase A family, 5	1653 bp downstream
Rnase4	ribonuclease, RNase A family 4	within coordinates
Rr288976	regulatory region 288976	within coordinates
Rr288977	regulatory region 288977	1286 bp proximal
Rr299307	regulatory region 299307	within coordinates
Tssr125402	transcription start site region 125402	1216 bp upstream
Tssr125403	transcription start site region 125403	1292 bp upstream
Tssr125404	transcription start site region 125404	1505 bp upstream
Tssr125405	transcription start site region 125405	1670 bp upstream
Tssr125406	transcription start site region 125406	1754 bp upstream
Tssr128409	transcription start site region 128409	1718 bp downstream
Tssr128410	transcription start site region 128410	1755 bp downstream