rs30894899 SNP Detail

Summary

• ID
  rs30894899
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89067680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTAGGGCCTC CCCAACCGGT CCAGGGCCAT GGCGGGCGCG CAAGTCTCTG GGAGAGCAGC
  CCAGGCAGGG GAGCTCCGAC CCGCGTGCGC CCGGGGCACA GGGGGCGTGT GCAGGCGACA
  GACGTGCGAG AGCTGCGCCC CCTGGCGAGG GCTGCGTGAG ACTGGGCGGG GCGGGGCGGG
  GCGGGCCGCT GGCACAACTG CTGCCCACAC TTTCCCGAGA GGGCGTGGCT TAGGGGTCCT
  GAGGGTGGGG TGGGTGCTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  S
  TGTGTGTCTG TCTGTCTGTC TGTCTGTGTC TGTGTGTGTG TCTGTGTGTC TGTGTGGTGG
  GAGTGCTCAG CTTGCTTCTG GAGGCGGGAA ACTCACTAGG GCATATGCAG CCTGGGGACC
  TCCTGAGGGT CAGGGACAGA ATGGGAATCT GTTCTGACCA TGTCCTTTCT CAGCACTCTC
  CTAGGAGTCT TGCTATGCCA GAGATCCTCT AAACTGCTTT CTGTAGTATG TGTTTCCTAA
  TTCATTAAGA CAACCTTTAG CAAAACCATT CACTGAGTGC ATGCTGAGGA TGCAAAACTG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45476049	mCV24134785	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30894899					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89067680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13404	CpG island 13404	within coordinates
Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	142 bp upstream
Rr579960	regulatory region 579960	within coordinates
Rr579961	regulatory region 579961	147 bp distal
Tssr34093	transcription start site region 34093	171 bp upstream