rs30894985 SNP Detail

Summary

• ID
  rs30894985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135937128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATCACAA CCACGTATTC
  CTGCTTTAGA CAACCTGGTA AACATCCTTC CTTGATGCTA AACTGAAAAA AATCCTCGGT
  GCCTCCTTTA GACCCCATGA ACTACAAATT CTATCCCTCT TCCCCAGGAC ATGCCTTGGC
  ATGGTTAAGA GAGTTGTCAT CCCCCAGATT CTCATATGAT GTTCAAGGCA TCCATTGCAT
  Y
  GACCCCTGTC TAAGTGCATT CTCGTATGTG CTCTTCGTGG TCTGTGTCCC TAAATGGAAG
  ATAGCACTCA GCTAGATGGG TGAAAGATTC ACTCGAGATC CATGGTTCTC AATCTGTGGG
  TCGCCACCCC CTTGGAAGTC AAGTGACCCT GAGACCATGG AAAACACAGA TATCTGCATC
  ACAATTCATA ATAAAAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49682241	NES12983718	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30894985					SNP	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682241	NES12983718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135937128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	1494 bp distal
Rr12652	regulatory region 12652	673 bp proximal
Rr19440	regulatory region 19440	73 bp proximal
Rr28609	regulatory region 28609	527 bp distal
Rr30723	regulatory region 30723	1074 bp proximal
Rr372097	regulatory region 372097	within coordinates
Tmem9	transmembrane protein 9	within coordinates