rs30894988 SNP Detail

Summary

• ID
  rs30894988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135936042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCTCTT GGTGAGCCCC
  ACCCACTTTA TCCCTGAAAC ACACAGGGCA CTTGCCCTTT GCGTCCACAT GGGCAAATAT
  TTAACCTTTC CATTTTTGCA GTGGCTTGTG AGTCTGGGTG TCCTGCAGAG TTTGACACAT
  AACAGGCACC CGATACCTGT TTGTTGAATG TGTAAGTCCA TCAGCTTGTC TGTCTCCTAG
  R
  AAAGTGCTGT TCCCAGACTA GCACGTATTT CATCACAGGG TTATGACTTG TCACGTGTGT
  CGCTAAGTAA AATGCTAAGC ATCCAAATGG GCGTGTTTAT CACTTTCAAA GGTAAGTCAG
  ATGAGATCGA CAATTTTTTG TTTTTCATTT TAAATTTGTT TTTAAAGTTT GTTTGTTTGT
  TTGTTTAATT TTATCTATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49682244	NES12983761	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30894988					SNP	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682244	NES12983761	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135936042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	408 bp distal
Igfn1	immunoglobulin-like and fibronectin type III domain containing 1	1962 bp upstream
Rr12652	regulatory region 12652	1759 bp proximal
Rr19440	regulatory region 19440	1159 bp proximal
Rr28609	regulatory region 28609	within coordinates
Rr372097	regulatory region 372097	193 bp upstream
Tmem9	transmembrane protein 9	within coordinates