rs30894989 SNP Detail

Summary

• ID
  rs30894989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135935563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTTTGC ATTCTGGGCA
  GGAACGCTGT GGGTTGAGAT CCTGACCTGG GGGCTCGCGC ACCCCCACAG CAGGAAAGCA
  CAGAGGCTCT GCAGCAGGAT CCTCCCTTCT CAGAAATCCT TCCAAGCTCT GGGGAAAGCT
  GAAGCCAGTG GGCAGCCCGC TACACCGCAG ACGGTCCGGG AGATGTGTCA CATTTTTCTC
  Y
  GGGTTAATTA CCTCGGGCTG GGAATCCGAG CCGTATCTGT CTCGGGCACA ACAAGCCTTG
  TCGCCTGGTG GGAGAATCTT AATCTTTCTA AGGTGACAGC TGCTGGCCTG GGACAGAAAT
  GTCCTTATTC TGGGGGCGCC ACCTGTTGCA CTAAACTGCA AAAAAGCCCA GGAGTCTAGA
  TTGAGGTGGA GCCTTTCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49682245	NES12983759	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30894989					SNP	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682245	NES12983759	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135935563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	within coordinates
Igfn1	immunoglobulin-like and fibronectin type III domain containing 1	1483 bp upstream
Rr19440	regulatory region 19440	1638 bp proximal
Rr28609	regulatory region 28609	within coordinates
Rr372097	regulatory region 372097	672 bp upstream
Tmem9	transmembrane protein 9	394 bp upstream