rs30895126 SNP Detail

Summary

• ID
  rs30895126
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51340929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATGGGC TTGAAGTAGA
  ATAGAGTAAA CCCTAAGCCA TTTCAGTGGC GTGTGTGATC CAGAGCCGCA ACTTTGAAGG
  CAAGCACAGT GGATTCTGTA TACATCAAGC CATCTCAGAA GGAGACTGCT CTTGGACTGT
  GCCTTCAGTG ATAGACCATT ATTTTGGGGT GCCCTCTTCT CTTGTATCAG GAACAATGTT
  W
  ATTTGCTCAT GTCAATCAAC CTGCAAGTCA GTCTGAGGAC TGGCCACCAG ATGGCAGCAC
  CTCCTAGCCA TTCTGCAGGA AAGTAACTGG CCATGCCTTT ATTATCCTGT TTTGTTTGTT
  TAAATAATAT ATTTATTAAT CCTTTAAGAA TTTCATACAG TATATTTGAT CATCTTCACT
  TTCCTCTCTC TATTCTTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	LG/J	MOLF/EiJ	SM/J
ss49182653	NES12492529	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A		T
ss139474622	ENSMUSSNP416140	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324621051	CHEV_14_51723147	CHEVERUD	SCREENING_POP	f	SNP						A		T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	LG/J	MOLF/EiJ	SM/J
rs30895126					SNP	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182653	NES12492529	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51340929 () rs orientation: forward

Symbol	Name	Function Class
Ang	angiogenin, ribonuclease, RNase A family, 5	1467 bp downstream
Rnase4	ribonuclease, RNase A family 4	within coordinates
Rr288976	regulatory region 288976	within coordinates
Rr288977	regulatory region 288977	1472 bp proximal
Rr295427	regulatory region 295427	1830 bp distal
Rr299307	regulatory region 299307	within coordinates
Tssr125402	transcription start site region 125402	1402 bp upstream
Tssr125403	transcription start site region 125403	1478 bp upstream
Tssr125404	transcription start site region 125404	1691 bp upstream
Tssr125405	transcription start site region 125405	1856 bp upstream
Tssr125406	transcription start site region 125406	1940 bp upstream
Tssr128409	transcription start site region 128409	1904 bp downstream
Tssr128410	transcription start site region 128410	1941 bp downstream