rs30895594 SNP Detail

Summary

• ID
  rs30895594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135935180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    taggattag cgagtctggg tcagcctCTG
  GTCTCTCAAT GCTCCCCAGA ACGCGAACTG AAAGCCTTTA AAGCCCGGAA ACCCAGCCAA
  CTATGAATGC AATCTGAGGT AGGTAATCTC TGCGTGTGAA GTGATTATGT GTAAAAACAG
  Y
  GGATTAGTGT GTCCGTGCAG CTATGTCTCC TGGGATCAGC GGGACCTAGC CTCTTACCCC
  GCCTTGGGAC ACAGAGCGGT GACCTCCCTA ATGCAATGCA AGACCACCAG CACTCGCGCG
  TGGAGCTCAG TAACCCCGTA CATTCTGCTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49682250	NES12983753	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		C	T	C		C
ss319994322	CHEV_1_137904019	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30895594					SNP	T	T	T	T	T	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682250	NES12983753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135935180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	within coordinates
Igfn1	immunoglobulin-like and fibronectin type III domain containing 1	1100 bp upstream
Rr28609	regulatory region 28609	within coordinates
Rr372097	regulatory region 372097	1055 bp upstream
Tmem9	transmembrane protein 9	777 bp upstream