rs30895596 SNP Detail

Summary

• ID
  rs30895596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135934542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATCTCAC CTCCCTAAAC
  CCCTTGCCAC CCCATGACTA CTCTTTAACT TTCCAGGCTC CTGCTTCTCC CAGCCTGAGA
  AACATGGCCT AGGGAACGCT TTACTAAGGG ACTCAAAATG TTTTGGAAGT AGGAAGCAAA
  CCTATGGGGC AAAGTCCAGA ATCCTAAAAT TGGGCCAGGA TGAAGGCCCA GGTCAGGGAA
  R
  CCGATTTGCA ACAGCCTCAA AGAACTATCA AGGCTGCCTC TAGGCTGCCT GGACTTGGGC
  AAATTACCTC CCCATCTCTG GGCCTCAGTT TCCCTATTGA GTGAGCAATT GGCTCGAATA
  TTTTCCAAAC TCCTGCTAGA ATCATTAGAG CCGCAGAGAT CCTTATGGAC ATCGCTAATT
  AGTCCCTGCA AATAAGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49682252	NES12983778	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30895596					SNP	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682252	NES12983778	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135934542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	624 bp proximal
Igfn1	immunoglobulin-like and fibronectin type III domain containing 1	462 bp upstream
Rr28609	regulatory region 28609	458 bp proximal
Rr372097	regulatory region 372097	1693 bp upstream
Tmem9	transmembrane protein 9	1415 bp upstream