rs30895597 SNP Detail

Summary

• ID
  rs30895597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135934490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCATCTA TTAACAGCAA
  GTTGTAAACA GATCAGGTAC ACAGTGCCCA TGAAGATCTC ACCTCCCTAA ACCCCTTGCC
  ACCCCATGAC TACTCTTTAA CTTTCCAGGC TCCTGCTTCT CCCAGCCTGA GAAACATGGC
  CTAGGGAACG CTTTACTAAG GGACTCAAAA TGTTTTGGAA GTAGGAAGCA AACCTATGGG
  R
  CAAAGTCCAG AATCCTAAAA TTGGGCCAGG ATGAAGGCCC AGGTCAGGGA AGCCGATTTG
  CAACAGCCTC AAAGAACTAT CAAGGCTGCC TCTAGGCTGC CTGGACTTGG GCAAATTACC
  TCCCCATCTC TGGGCCTCAG TTTCCCTATT GAGTGAGCAA TTGGCTCGAA TATTTTCCAA
  ACTCCTGCTA GAATCATTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49682253	NES12983777	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30895597					SNP	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682253	NES12983777	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135934490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	676 bp proximal
Igfn1	immunoglobulin-like and fibronectin type III domain containing 1	410 bp upstream
Rr28609	regulatory region 28609	510 bp proximal
Rr372097	regulatory region 372097	1745 bp upstream
Tmem9	transmembrane protein 9	1467 bp upstream