rs30895873 SNP Detail

Summary

• ID
  rs30895873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106015151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCCACTG TGATCCATGG
  ATGAACCTGA GTCCTTGTAA GAACTAAATC ATGGAGCTGG AGAGACTTGC TGCTCTCCCT
  GAGAACCCAA ATCCAGTTCC TAGTGTCCAC GCAGGCTAAC TCCAGCTGCA GGAGACCCAA
  GGCCCTCTTC TGGCCTCCAC GGGCACATGC ATATACCCAT ACCCAGAAAT AATAAAAATA
  R
  ACCTCTAAAG CAAAAATACT ATAATCATTC CTTTCGCAAA CTTAGATACC CTGTTTAGAC
  TCCCCCCACC CCCACCCCGG CATCCTCCTC CTTCTCGGAG TCTTCCTCCA CCTTACCTAG
  TGATCGGCTG CTTAAAAAAT GACTTCTAGT CTCAGATCTC ATTCACCCTC AAACTGTATA
  CTTTTCTGGA TGTCTACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47495684	NES11195677	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30895873					SNP	G	G	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495684	NES11195677	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106015151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20922	CpG island 20922	371 bp proximal
Exoc3l	exocyst complex component 3-like	1405 bp downstream
Gm20163	predicted gene, 20163	664 bp upstream
Matcap1	microtubule associated tyrosine carboxypeptidase 1	within coordinates
Rr401088	regulatory region 401088	513 bp upstream
Rr401089	regulatory region 401089	939 bp upstream
Rr668838	regulatory region 668838	1393 bp distal
Rr668839	regulatory region 668839	within coordinates
Rr668840	regulatory region 668840	521 bp proximal
Rr668841	regulatory region 668841	675 bp proximal
Rr668842	regulatory region 668842	746 bp proximal
Rr668843	regulatory region 668843	872 bp proximal
Rr668844	regulatory region 668844	999 bp proximal
Rr668845	regulatory region 668845	1079 bp proximal
Rr668846	regulatory region 668846	1335 bp proximal
Rr668847	regulatory region 668847	1738 bp proximal
Tssr79123	transcription start site region 79123	1464 bp upstream
Tssr82634	transcription start site region 82634	549 bp downstream
Tssr82635	transcription start site region 82635	565 bp downstream
Tssr82636	transcription start site region 82636	601 bp downstream
Tssr82637	transcription start site region 82637	946 bp downstream
Tssr82638	transcription start site region 82638	1356 bp downstream