rs30896284 SNP Detail

Summary

• ID
  rs30896284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106030870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCAGCAT CGAAGAATGT
  AGGTCAGCGG ATAAAAACCT GAGGAATGTG TAGAGCCCTG GAGCCTAGTG GTGTACGACG
  TGAAGCAAGC TGAACTATAG TAGAACTCAG CTGAGCTTCC TGTGAGCTTG GCTTTCTTCT
  CTTTCAGTTC TGGATCTCCC CAAAGAGCTG TCAGAAATCT TCGACCCCAC GAGAGGTAGG
  Y
  GGTGTTCCTC CTTTTGATTG GATGCAGGGC ATAAGGAGCA TAGTTTGAGT TCTGGGTTCC
  CTTCTAAGGG TATCTGCTGG GTATCCCAGA AAAAGGGTGA GGTTCCTAAT GGGCCTGTGT
  GGGGGTCTCA TTCCTGGGCT TTGGTGGGTG GAGGCGCAAG AGCCAGAATC TGAATGAATT
  GTGTTCATTC CCAGAGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47495744	NES11195082	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30896284					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495744	NES11195082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106030870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20925	CpG island 20925	1368 bp proximal
E2f4	E2F transcription factor 4	within coordinates
Elmo3	engulfment and cell motility 3	1370 bp upstream
Rr668857	regulatory region 668857	120 bp distal
Rr668858	regulatory region 668858	355 bp proximal
Rr668859	regulatory region 668859	881 bp proximal
Rr668860	regulatory region 668860	1459 bp proximal
Tssr79127	transcription start site region 79127	1686 bp downstream
Tssr79128	transcription start site region 79128	134 bp downstream
Tssr79129	transcription start site region 79129	94 bp downstream
Tssr79130	transcription start site region 79130	330 bp upstream
Tssr79131	transcription start site region 79131	508 bp upstream
Tssr79132	transcription start site region 79132	1334 bp upstream