rs30896287 SNP Detail

Summary

• ID
  rs30896287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106031275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGAGCTG CTGGAAGAAC
  TGATGTCTTC AGAAGGTGGG TAGCCCAGGA AGATAAGGGT AGCTGTGAGC AAGGGGGTGG
  GTGACTGCTG GGGGTCTTGG CCTAAGACCT CAGCCTAATG CTTTCTGCAG TGTTTGCCCC
  CCTCCTCCGA CTTTCTCCAC CTCCCGGAGA CCACGATTAC ATCTACAACC TGGACGAGAG
  Y
  GAAGGTGTCT GTGATCTCTT TGATGTTCCT GTTCTCAAAC TCTGACTGAC AGGGACATGT
  CCTGTGCAGC TGCAACCCAG ACTGTCTGGG CCTGGAGCCA ACTAGGGACT GCCCCCCACC
  CCCACCCTAA CCCCAAGAGC CCAACTCTTG GCTTACTCAG CCTTTTCTGG TCGCTCAGTT
  CGGGCTGTGC TCTCCTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47495747	NES11195083	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30896287					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495747	NES11195083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106031275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20925	CpG island 20925	963 bp proximal
E2f4	E2F transcription factor 4	within coordinates
Elmo3	engulfment and cell motility 3	965 bp upstream
Rr668857	regulatory region 668857	525 bp distal
Rr668858	regulatory region 668858	29 bp distal
Rr668859	regulatory region 668859	476 bp proximal
Rr668860	regulatory region 668860	1054 bp proximal
Tssr79128	transcription start site region 79128	539 bp downstream
Tssr79129	transcription start site region 79129	499 bp downstream
Tssr79130	transcription start site region 79130	46 bp downstream
Tssr79131	transcription start site region 79131	103 bp upstream
Tssr79132	transcription start site region 79132	929 bp upstream