rs30896446 SNP Detail

Summary

• ID
  rs30896446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136936392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACAACCTT TGAGACATCT TGTGGCCTTT
  TTTGTCTTTG TTTGtttatt tgtttgagac agggtttctc tgtgtagccc tggaagttct
  gaaactcact ctatagacca ggctggcatc aaactcaaag aaagatctgc ctgcctctgc
  Y
  ttctgagtgc tggaattaga gttcaccact gcttgTTTTT ATTTTTATTT Atttattcat
  tttgagacat gctctcattt catagccttg ctgggtttgt aggtgtgaaa cttgcaagat
  ggataaagct tactttgaac ttacagctgt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44974744	mCV23233953	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss145563670	ENSMUSSNP4446142	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss319997350	CHEV_1_138905231	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30896446					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136936392 () rs orientation: forward

Symbol	Name	Function Class
Gm70790	predicted gene, 70790	within coordinates
Rr419562	regulatory region 419562	1614 bp proximal
Rr419563	regulatory region 419563	1720 bp proximal