rs30896565 SNP Detail

Summary

• ID
  rs30896565
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130370597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACCCTAGC CGCTCCAAAT TCACTTCCAG GGGATCTGGT
  GCCCTCTTCT GGTAGCCAGG CGTACTGCAC ACACATTATG TCCACGCATA CATGCAAAGC
  W
  CTCAACACAT ACATACAAAA TAAAAATAAA TCCGGGGAGG TGAAAAAAAA AAAAAAGGAT
  GAGGACAAAA TGAAGATGCT TCATCCGAGA AGAATAACT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45477797	mCV24294382	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss135896439	ENSMUSSNP4092501	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30896565					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130370597 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Cpgi13824	CpG island 13824	1469 bp distal
Rr585176	regulatory region 585176	1985 bp distal
Rr585177	regulatory region 585177	within coordinates
Rr585178	regulatory region 585178	44 bp distal