rs30896659 SNP Detail

Summary

• ID
  rs30896659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106015291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCTCTTC TGGCCTCCAC
  GGGCACATGC ATATACCCAT ACCCAGAAAT AATAAAAATA GACCTCTAAA GCAAAAATAC
  TATAATCATT CCTTTCGCAA ACTTAGATAC CCTGTTTAGA CTCCCCCCAC CCCCACCCCG
  GCATCCTCCT CCTTCTCGGA GTCTTCCTCC ACCTTACCTA GTGATCGGCT GCTTAAAAAA
  Y
  GACTTCTAGT CTCAGATCTC ATTCACCCTC AAACTGTATA CTTTTCTGGA TGTCTACTGA
  CCACTATATG GGCCAGTTCT TCCATTTTCC CTTCGTTCAT TCCACCTACC TCCACGTAAT
  TACCAGAATT CACCTGTTTC TTTCACGTCT CAGGTTCTTC TGCCAAGAAT TCTTTTGCCA
  ATGTGTCCCT GGAGCAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47495690	NES11195680	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30896659					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495690	NES11195680	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106015291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20922	CpG island 20922	231 bp proximal
Exoc3l	exocyst complex component 3-like	1265 bp downstream
Gm20163	predicted gene, 20163	524 bp upstream
Matcap1	microtubule associated tyrosine carboxypeptidase 1	within coordinates
Rr401088	regulatory region 401088	373 bp upstream
Rr401089	regulatory region 401089	799 bp upstream
Rr668838	regulatory region 668838	1533 bp distal
Rr668839	regulatory region 668839	within coordinates
Rr668840	regulatory region 668840	381 bp proximal
Rr668841	regulatory region 668841	535 bp proximal
Rr668842	regulatory region 668842	606 bp proximal
Rr668843	regulatory region 668843	732 bp proximal
Rr668844	regulatory region 668844	859 bp proximal
Rr668845	regulatory region 668845	939 bp proximal
Rr668846	regulatory region 668846	1195 bp proximal
Rr668847	regulatory region 668847	1598 bp proximal
Tssr79123	transcription start site region 79123	1324 bp upstream
Tssr82634	transcription start site region 82634	409 bp downstream
Tssr82635	transcription start site region 82635	425 bp downstream
Tssr82636	transcription start site region 82636	461 bp downstream
Tssr82637	transcription start site region 82637	806 bp downstream
Tssr82638	transcription start site region 82638	1216 bp downstream