rs30896662 SNP Detail

Summary

• ID
  rs30896662
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106016335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGCGCAC GCTCACACGA
  AGACGCAAGG GCCACGTCCG TCTCCGCCGT AGGGGGCGTG CTTAAGCTCG CTGTGGGCGG
  AGCCAAACGT GCGAAGAGGG GCGGGATTCG CTGCCACCCT GCGCCCCTGG ACCGCGTCTG
  GTCCTAGACT TCCCCCTCTT CAAACTTCCG CGCTTCTAAA GCGACTGGCG AGGGCGATGA
  W
  ACCATTTACT GCTTGCCGGT AGTAGATACA TAGGAAGTGA GTACTCCACG GGAGCCCAGG
  GTTCGGGGCA CGCAGTCCAC AAAGAGAGCA GATGTCTGCA TAGGTGAGAT GCTGCCAGAA
  TACTAGGATT CAGCCAGGAT TATAGATGTA CCACTGTGCA CGGACCCCTA ATTGCACTGT
  TGCTTTCACC GGCGCGCCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47495693	NES11195660	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30896662					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495693	NES11195660	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106016335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20922	CpG island 20922	within coordinates
Exoc3l	exocyst complex component 3-like	221 bp downstream
Gm20163	predicted gene, 20163	within coordinates
Matcap1	microtubule associated tyrosine carboxypeptidase 1	175 bp upstream
Rr401088	regulatory region 401088	370 bp downstream
Rr401089	regulatory region 401089	within coordinates
Rr668839	regulatory region 668839	664 bp distal
Rr668840	regulatory region 668840	510 bp distal
Rr668841	regulatory region 668841	186 bp distal
Rr668842	regulatory region 668842	417 bp distal
Rr668843	regulatory region 668843	291 bp distal
Rr668844	regulatory region 668844	106 bp distal
Rr668845	regulatory region 668845	within coordinates
Rr668846	regulatory region 668846	151 bp proximal
Rr668847	regulatory region 668847	554 bp proximal
Rr668848	regulatory region 668848	1417 bp proximal
Rr668849	regulatory region 668849	1652 bp proximal
Rr668850	regulatory region 668850	1770 bp proximal
Tssr79123	transcription start site region 79123	280 bp upstream
Tssr82634	transcription start site region 82634	620 bp upstream
Tssr82635	transcription start site region 82635	589 bp upstream
Tssr82636	transcription start site region 82636	565 bp upstream
Tssr82637	transcription start site region 82637	162 bp upstream
Tssr82638	transcription start site region 82638	172 bp downstream