rs30896822 SNP Detail

Summary

• ID
  rs30896822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52250346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACAGTGGGAA TCAAGGGTTA
  Y
  CTTGTTCCTG TTTGTATTTT TGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss39232412	mCV24785356	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss139499037	ENSMUSSNP4357405	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss324626583	CHEV_14_52632564	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30896822					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52250346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6436	CpG island 6436	955 bp proximal
Rr491855	regulatory region 491855	1683 bp proximal
Tssr128474	transcription start site region 128474	1984 bp upstream
Tssr128475	transcription start site region 128475	1670 bp downstream
Tssr128476	transcription start site region 128476	1848 bp downstream
Tssr128477	transcription start site region 128477	1972 bp downstream
Zfp219	zinc finger protein 219	within coordinates