rs30896878 SNP Detail

Summary

• ID
  rs30896878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122345432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG AGAGCGGGAG AAAGAACCTG
  Y
  CTTGAAAATG TTGGTTTCGT AGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39233058	mCV22559868	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss147010827	ENSMUSSNP2269281	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss324857946	CHEV_14_122507242	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30896878					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122345432 () rs orientation: forward

Symbol	Name	Function Class
A330035P11Rik	RIKEN cDNA A330035P11 gene	1046 bp upstream
Cpgi6888	CpG island 6888	174 bp distal
Gm56752	predicted gene, 56752	1086 bp downstream
Rr296792	regulatory region 296792	within coordinates
Tm9sf2	transmembrane 9 superfamily member 2	within coordinates
Tssr127315	transcription start site region 127315	976 bp downstream
Tssr127316	transcription start site region 127316	950 bp downstream
Tssr127317	transcription start site region 127317	904 bp downstream
Tssr127318	transcription start site region 127318	848 bp downstream
Tssr130317	transcription start site region 130317	1093 bp upstream
Tssr130318	transcription start site region 130318	1031 bp upstream