rs30897141 SNP Detail

Summary

• ID
  rs30897141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40906019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTGAGCAT GTTTATGGGG TTGTGAGGGT CAAATGCGGT
  GAAGGGATCC TGTACAATTG TGATTGTTTT ATCTCTCCTG TAGGGGGAGA TAAATGTTGA
  R
  CCAATTTAGT TTCTTAGGTT TTGCACGCAG AACCAATTTA GTTTCTTAGG TTTTGCACGC
  AGAAATGCTC ACTAACTTAT TTGCTTTTGT TATTTTGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45477464	mCV23070505	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss135040340	ENSMUSSNP5917011	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30897141					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40906019 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	379 bp distal
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr397652	regulatory region 397652	1771 bp downstream
Rr575872	regulatory region 575872	1746 bp distal
Rr575873	regulatory region 575873	1509 bp distal
Rr575874	regulatory region 575874	782 bp distal
Rr575875	regulatory region 575875	within coordinates
Rr575876	regulatory region 575876	7 bp distal
Tssr28976	transcription start site region 28976	1770 bp downstream
Tssr28977	transcription start site region 28977	1732 bp downstream
Tssr28978	transcription start site region 28978	1644 bp downstream
Tssr28979	transcription start site region 28979	1628 bp downstream
Tssr28980	transcription start site region 28980	1616 bp downstream
Tssr28981	transcription start site region 28981	1166 bp downstream
Tssr28982	transcription start site region 28982	927 bp downstream
Tssr28983	transcription start site region 28983	746 bp downstream