rs30897289 SNP Detail

Summary

• ID
  rs30897289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106031518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGACAG GGACATGTCC
  TGTGCAGCTG CAACCCAGAC TGTCTGGGCC TGGAGCCAAC TAGGGACTGC CCCCCACCCC
  CACCCTAACC CCAAGAGCCC AACTCTTGGC TTACTCAGCC TTTTCTGGTC GCTCAGTTCG
  GGCTGTGCTC TCCTGTCTTG CACTGGCACT TGTGACTGTG CTAGCATAGC TGGGCAGAGA
  R
  CTTAGCCCTC TCTACATGGA GCCTTCCCCA GCCAGGCTCA GCTGCCCCTC AGTGGCACCT
  CTGCCTTGTT CCTACCAGTC ACTATGAAGG AGGTTCAGAG AGAGGGTGGT GCTGGGTGGT
  TGCCTACCAT CACCTTTCCT TTCCCACCTG CTCACCCTGC AGCCTCTGGA CATCTCGGAT
  GCTCCCTGAG AGTCCTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss47495759	NES11195087	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30897289					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495759	NES11195087	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106031518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20925	CpG island 20925	720 bp proximal
E2f4	E2F transcription factor 4	within coordinates
Elmo3	engulfment and cell motility 3	722 bp upstream
Rr668857	regulatory region 668857	768 bp distal
Rr668858	regulatory region 668858	272 bp distal
Rr668859	regulatory region 668859	233 bp proximal
Rr668860	regulatory region 668860	811 bp proximal
Tssr79128	transcription start site region 79128	782 bp downstream
Tssr79129	transcription start site region 79129	742 bp downstream
Tssr79130	transcription start site region 79130	289 bp downstream
Tssr79131	transcription start site region 79131	114 bp downstream
Tssr79132	transcription start site region 79132	686 bp upstream