rs30897292 SNP Detail

Summary

• ID
  rs30897292
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106032009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGCCCA CCCACCCCCA
  TCTCCCTTCA CTTCCACTTA TTCACTTACC CTCATTTAGA GCCATTGCAG AGATTTAGAA
  AGATTTACAG TAACGAATGA ATTCCTATAT AAAGATTATT TTTATACTTT TTTCAACAAA
  AGGAAATGTA ATATTTGTAC AGCATTCAAG TGAATAAAGA CATGCCTAAG GCTATCTCTG
  W
  TCTGGTTCTT TGGGGCCCCT ACCTGGGACG CTGGATTGTT GCTGAGACTG GGTGGGTCAC
  CTTACTGGAA TGGGAGGTGT GGCTGCTGTG TAGGAAGCCT GCTGCCACAG CCTCTACCTG
  CTGCACCTTG GTGTGGGGCG GGGCCAGGCA GGCCTCTACG GGGCGGAGCA GGGCAGGGCA
  GGCGGGGTCT TACCCTCCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47495762	NES11195088	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30897292					SNP	A	A	A	A	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495762	NES11195088	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106032009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20925	CpG island 20925	229 bp proximal
E2f4	E2F transcription factor 4	7 bp downstream
Elmo3	engulfment and cell motility 3	231 bp upstream
Rr668857	regulatory region 668857	1259 bp distal
Rr668858	regulatory region 668858	763 bp distal
Rr668859	regulatory region 668859	within coordinates
Rr668860	regulatory region 668860	320 bp proximal
Tssr79128	transcription start site region 79128	1273 bp downstream
Tssr79129	transcription start site region 79129	1233 bp downstream
Tssr79130	transcription start site region 79130	780 bp downstream
Tssr79131	transcription start site region 79131	605 bp downstream
Tssr79132	transcription start site region 79132	195 bp upstream