rs30897545 SNP Detail

Summary

• ID
  rs30897545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106016662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCAGCCA GGATTATAGA
  TGTACCACTG TGCACGGACC CCTAATTGCA CTGTTGCTTT CACCGGCGCG CCCCCAACAC
  ATAGATTCAG ACGTGTCGTA GACGTGGCTT TATTACGCAA ACAGATGGGT GTCAGGAGCA
  GGGACCTGAA GGGAGGCAGG AGGACAGGGA GGGCGTAGGC GTCGGTACCA GGCTGAAGAG
  Y
  GCCCGGCGGC CAGTGGACGG TGAGGGCGGT GGACCCGCCT GCAGCGAACT GAGTGCTGCC
  TGACGATGCT CTCGGGACAC GTCTCCGCGC AGGTCCAAGA GGGCAGAGAC GTGATCCTCG
  CTGCAGGAAT ACCACCACGT GCGTCAGCCC AGCCCTCCCT CGTCCTCCTG GGCCGTTCCT
  CCCCTGTCCC CTTCCTCGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47495696	NES11195661	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30897545					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495696	NES11195661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106016662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20922	CpG island 20922	within coordinates
Exoc3l	exocyst complex component 3-like	within coordinates
Gm20163	predicted gene, 20163	within coordinates
Matcap1	microtubule associated tyrosine carboxypeptidase 1	502 bp upstream
Rr401088	regulatory region 401088	697 bp downstream
Rr401089	regulatory region 401089	271 bp downstream
Rr668839	regulatory region 668839	991 bp distal
Rr668840	regulatory region 668840	837 bp distal
Rr668841	regulatory region 668841	513 bp distal
Rr668842	regulatory region 668842	744 bp distal
Rr668843	regulatory region 668843	618 bp distal
Rr668844	regulatory region 668844	433 bp distal
Rr668845	regulatory region 668845	177 bp distal
Rr668846	regulatory region 668846	within coordinates
Rr668847	regulatory region 668847	227 bp proximal
Rr668848	regulatory region 668848	1090 bp proximal
Rr668849	regulatory region 668849	1325 bp proximal
Rr668850	regulatory region 668850	1443 bp proximal
Tssr79123	transcription start site region 79123	21 bp downstream
Tssr82634	transcription start site region 82634	947 bp upstream
Tssr82635	transcription start site region 82635	916 bp upstream
Tssr82636	transcription start site region 82636	892 bp upstream
Tssr82637	transcription start site region 82637	489 bp upstream
Tssr82638	transcription start site region 82638	144 bp upstream