rs30897548 SNP Detail

Summary

• ID
  rs30897548
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106016769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTATTACG CAAACAGATG
  GGTGTCAGGA GCAGGGACCT GAAGGGAGGC AGGAGGACAG GGAGGGCGTA GGCGTCGGTA
  CCAGGCTGAA GAGCGCCCGG CGGCCAGTGG ACGGTGAGGG CGGTGGACCC GCCTGCAGCG
  AACTGAGTGC TGCCTGACGA TGCTCTCGGG ACACGTCTCC GCGCAGGTCC AAGAGGGCAG
  W
  GACGTGATCC TCGCTGCAGG AATACCACCA CGTGCGTCAG CCCAGCCCTC CCTCGTCCTC
  CTGGGCCGTT CCTCCCCTGT CCCCTTCCTC GCACCTCACG TCGGGAAATT GCTGCCTCAA
  GCCTGCCACC TCGAGGCCAA GCAGTGTGGG GTCGTGGAGG TTGAGCAGTT CCCTCAGCGC
  GAGCAGGACG GGCGCGCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47495699	NES11195662	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30897548					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495699	NES11195662	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106016769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20922	CpG island 20922	within coordinates
Exoc3l	exocyst complex component 3-like	within coordinates
Gm20163	predicted gene, 20163	within coordinates
Matcap1	microtubule associated tyrosine carboxypeptidase 1	609 bp upstream
Rr401088	regulatory region 401088	804 bp downstream
Rr401089	regulatory region 401089	378 bp downstream
Rr668839	regulatory region 668839	1098 bp distal
Rr668840	regulatory region 668840	944 bp distal
Rr668841	regulatory region 668841	620 bp distal
Rr668842	regulatory region 668842	851 bp distal
Rr668843	regulatory region 668843	725 bp distal
Rr668844	regulatory region 668844	540 bp distal
Rr668845	regulatory region 668845	284 bp distal
Rr668846	regulatory region 668846	within coordinates
Rr668847	regulatory region 668847	120 bp proximal
Rr668848	regulatory region 668848	983 bp proximal
Rr668849	regulatory region 668849	1218 bp proximal
Rr668850	regulatory region 668850	1336 bp proximal
Rr668851	regulatory region 668851	1901 bp proximal
Tssr79123	transcription start site region 79123	128 bp downstream
Tssr82634	transcription start site region 82634	1054 bp upstream
Tssr82635	transcription start site region 82635	1023 bp upstream
Tssr82636	transcription start site region 82636	999 bp upstream
Tssr82637	transcription start site region 82637	596 bp upstream
Tssr82638	transcription start site region 82638	251 bp upstream