rs30897551 SNP Detail

Summary

• ID
  rs30897551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106017518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAGGCT TCCGTACGCG
  CCAGAAGTCC TGGCAGAAGT GCGACGTCTG CTCACACACA CCATCTAGCA ACTCAGAACT
  CAATAGCCAC CGGCGCGAGG GCAGAGCGGA GAACAGGGGC TAGGGAAAGC ATAGCACAGA
  CAGGGCTAGG GAAATGATCC GGATCCCGTA GAGGCCACCA TAAATAGACC GTGTTTCTCC
  Y
  TCACACTACC AATCTAGACT GGGATGGCGA CCTCACCTGG AGCTCAACCT GCAGTACTTC
  CAAAACCAGG CGGCAGATCC TCCTTTGTAC GTCGTCCAGC GCAGCTTCCA CTGGAGCTAA
  GACCCCGGAA GCTTCCCCGT CCGGCAGCAG GACCGAGACC GAAGATCTGG ACCAAAAAGT
  GTGACTTCAG GACCAAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47495702	NES11195663	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30897551					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495702	NES11195663	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106017518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20922	CpG island 20922	within coordinates
Exoc3l	exocyst complex component 3-like	within coordinates
Gm20163	predicted gene, 20163	within coordinates
Matcap1	microtubule associated tyrosine carboxypeptidase 1	1358 bp upstream
Rr401088	regulatory region 401088	1553 bp downstream
Rr401089	regulatory region 401089	1127 bp downstream
Rr668839	regulatory region 668839	1847 bp distal
Rr668840	regulatory region 668840	1693 bp distal
Rr668841	regulatory region 668841	1369 bp distal
Rr668842	regulatory region 668842	1600 bp distal
Rr668843	regulatory region 668843	1474 bp distal
Rr668844	regulatory region 668844	1289 bp distal
Rr668845	regulatory region 668845	1033 bp distal
Rr668846	regulatory region 668846	532 bp distal
Rr668847	regulatory region 668847	608 bp distal
Rr668848	regulatory region 668848	234 bp proximal
Rr668849	regulatory region 668849	469 bp proximal
Rr668850	regulatory region 668850	587 bp proximal
Rr668851	regulatory region 668851	1152 bp proximal
Tssr79123	transcription start site region 79123	877 bp downstream
Tssr82634	transcription start site region 82634	1803 bp upstream
Tssr82635	transcription start site region 82635	1772 bp upstream
Tssr82636	transcription start site region 82636	1748 bp upstream
Tssr82637	transcription start site region 82637	1345 bp upstream
Tssr82638	transcription start site region 82638	1000 bp upstream