rs30897589 SNP Detail

Summary

• ID
  rs30897589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151825729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAGGCAG GGGGAGGACA
  TAGGGGGCTT GTGGGGGGGG GACTGGGAAG GGGAACAACA TTTGAACTGA AAATAGAATA
  ACCACTTTTT AAAAAAGAAA AAAAGAATCA AGGAAAAGAT GCAAACACCA GTGTCTTGGC
  TCAGAGTTTT TGTCTTCCCT TCATCGTATT TCAATCACAC ATCCAGTAAG CGTTACTACT
  R
  TTAGTAAGAT TAGTAGCTTC TTAGTGTATT TGCCTCTTTA TCCAAATGTA AACGCCTGGG
  GACAGTACAC AGTGACTCAG CATGGCAGTA GTCAGGAAGC AGGCTCTGGT CACTGTGACC
  TTCTCGCAGA GACCCTGGGA AAACAGCTTT AAGTTTAGAA TGACTGTGGG GATTGGATGG
  TTTTTTTTTT GCTTATAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45476462	mCV24210990	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss136100946	ENSMUSSNP238732	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss321028148	CHEV_3_151783056	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30897589					SNP	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151825729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587460	regulatory region 587460			14 bp proximal
Rr587461	regulatory region 587461			1480 bp proximal
Tssr1098	transcription start site region 1098			4 bp downstream
Tssr32394	transcription start site region 32394			218 bp upstream