rs30897721 SNP Detail

Summary

• ID
  rs30897721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17839669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGT GTCAAATAAA CTTTGGCCAC
  Y
  GGAGGAAAGA ACCCTATGGT TGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45476672	mCV22663385	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss46817670	NES10865024	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C		C	C	T	C		C	C	C	C		C
ss320673699	CHEV_3_17685505	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30897721					SNP	T	T	C	C	T	T	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817670	NES10865024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17839669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	523 bp proximal
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	within coordinates
Gm66000	predicted gene, 66000	1835 bp downstream
Rr573837	regulatory region 573837	1098 bp distal
Rr573838	regulatory region 573838	within coordinates
Rr573839	regulatory region 573839	97 bp proximal
Rr573840	regulatory region 573840	425 bp proximal
Rr573841	regulatory region 573841	544 bp proximal
Rr573842	regulatory region 573842	842 bp proximal
Rr573843	regulatory region 573843	1623 bp proximal
Tssr32672	transcription start site region 32672	189 bp upstream
Tssr32673	transcription start site region 32673	21 bp downstream
Tssr32674	transcription start site region 32674	63 bp downstream
Tssr32675	transcription start site region 32675	102 bp downstream
Tssr32676	transcription start site region 32676	802 bp downstream
Tssr32677	transcription start site region 32677	1329 bp downstream