rs30898198 SNP Detail

Summary

• ID
  rs30898198
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106033769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGATATC TTATGTGAAC ATGAACCTGA TGGATGCCTC
  TGTCCAGCCC CTGGCTCTGA GACTGCTGGA GAGTGTGACC TTGAGCAGTC CTGCCCTGGG
  M
  CAGCTGGTGA AGAGTGAGGT GCCACTGGAT AGGCTGCTGG TGCACCTGCA AGTGTAAGCC
  TCTAGGGTAC TGTGTGAACG GGGGGGGGGG GGGGGGAAGC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss47495768	NES11195090	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30898198					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495768	NES11195090	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106033769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20925	CpG island 20925	1275 bp distal
E2f4	E2F transcription factor 4	1767 bp downstream
Elmo3	engulfment and cell motility 3	within coordinates
Gm55919	predicted gene, 55919	655 bp downstream
Mir328	microRNA 328	1227 bp downstream
Tssr79132	transcription start site region 79132	1518 bp downstream