rs30898322 SNP Detail

Summary

• ID
  rs30898322
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:118574155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCCAGCTT CTGGGTACCT GGAAATCCAA GGGAAGCATA
  ATGCTATGCG CATTATCTTG GAAGGCTTAT GACTATAATC CCTATTTAGA GAGTGCTTTG
  R
  CTTTGAGCTG AAGTGATATC AGTTTAGAAA ACACGTATGT GCACACATGC ACACATACAT
  GCTTACACAT GTACACGCAC ATATACATGT ACACATACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45975529	mCV27570015	ABI	CRAMUS_MOUSE	f	SNP	A	G					G
ss48066862	NES11878604	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G		A	A		G	A	G		A
ss133584385	ENSMUSSNP5722659	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321925402	CHEV_6_118547212	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30898322					SNP	A	G	A	G	G	G	G	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48066862	NES11878604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118574155 () rs orientation: forward

Symbol	Name	Function Class
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	within coordinates
Gm38887	predicted gene, 38887	within coordinates