rs30898367 SNP Detail

Summary

• ID
  rs30898367
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106017618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGCGGA GAACAGGGGC
  TAGGGAAAGC ATAGCACAGA CAGGGCTAGG GAAATGATCC GGATCCCGTA GAGGCCACCA
  TAAATAGACC GTGTTTCTCC CTCACACTAC CAATCTAGAC TGGGATGGCG ACCTCACCTG
  GAGCTCAACC TGCAGTACTT CCAAAACCAG GCGGCAGATC CTCCTTTGTA CGTCGTCCAG
  M
  GCAGCTTCCA CTGGAGCTAA GACCCCGGAA GCTTCCCCGT CCGGCAGCAG GACCGAGACC
  GAAGATCTGG ACCAAAAAGT GTGACTTCAG GACCAAGGCC AAGGCTCGCA TGGCCCTCTA
  GGATTCATCC ACTCTGGCGC CACCTTGTGG TACAGTGTCT GGTGGGAGCT GGGGCGGAAA
  GGGCGGCTCT GAATTTATGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47495708	NES11195667	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30898367					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495708	NES11195667	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106017618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20922	CpG island 20922	within coordinates
Exoc3l	exocyst complex component 3-like	within coordinates
Gm20163	predicted gene, 20163	within coordinates
Matcap1	microtubule associated tyrosine carboxypeptidase 1	1458 bp upstream
Rr401088	regulatory region 401088	1653 bp downstream
Rr401089	regulatory region 401089	1227 bp downstream
Rr668839	regulatory region 668839	1947 bp distal
Rr668840	regulatory region 668840	1793 bp distal
Rr668841	regulatory region 668841	1469 bp distal
Rr668842	regulatory region 668842	1700 bp distal
Rr668843	regulatory region 668843	1574 bp distal
Rr668844	regulatory region 668844	1389 bp distal
Rr668845	regulatory region 668845	1133 bp distal
Rr668846	regulatory region 668846	632 bp distal
Rr668847	regulatory region 668847	708 bp distal
Rr668848	regulatory region 668848	134 bp proximal
Rr668849	regulatory region 668849	369 bp proximal
Rr668850	regulatory region 668850	487 bp proximal
Rr668851	regulatory region 668851	1052 bp proximal
Tssr79123	transcription start site region 79123	977 bp downstream
Tssr82634	transcription start site region 82634	1903 bp upstream
Tssr82635	transcription start site region 82635	1872 bp upstream
Tssr82636	transcription start site region 82636	1848 bp upstream
Tssr82637	transcription start site region 82637	1445 bp upstream
Tssr82638	transcription start site region 82638	1100 bp upstream