rs30898406 SNP Detail

Summary

• ID
  rs30898406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49025527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATG TAAATGGGTT CACATCATGT
  R
  CTGTGTTCTT TGCCCCTCTT TGCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45975708	mCV22727652	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss133168234	ENSMUSSNP1827755	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss321795253	CHEV_6_48998592	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30898406					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49025527 () rs orientation: forward

Symbol	Name	Function Class
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56341	transcription start site region 56341	1872 bp downstream
Tssr56342	transcription start site region 56342	1840 bp downstream
Tssr56343	transcription start site region 56343	1294 bp downstream
Tssr56344	transcription start site region 56344	1270 bp downstream
Tssr56345	transcription start site region 56345	1251 bp downstream
Tssr56346	transcription start site region 56346	1198 bp downstream
Tssr56347	transcription start site region 56347	1180 bp downstream
Tssr56348	transcription start site region 56348	1157 bp downstream
Tssr56349	transcription start site region 56349	836 bp downstream
Tssr56350	transcription start site region 56350	807 bp downstream
Tssr56351	transcription start site region 56351	780 bp downstream
Tssr56352	transcription start site region 56352	761 bp downstream
Tssr56353	transcription start site region 56353	693 bp downstream
Tssr56354	transcription start site region 56354	679 bp downstream
Tssr56355	transcription start site region 56355	655 bp downstream
Tssr56356	transcription start site region 56356	637 bp downstream
Tssr56357	transcription start site region 56357	625 bp downstream
Tssr56358	transcription start site region 56358	607 bp downstream
Tssr56359	transcription start site region 56359	576 bp downstream
Tssr56360	transcription start site region 56360	529 bp downstream
Tssr56361	transcription start site region 56361	1289 bp upstream
Tssr56362	transcription start site region 56362	1517 bp upstream
Tssr56363	transcription start site region 56363	1804 bp upstream
Tssr60849	transcription start site region 60849	1231 bp upstream
Tssr60850	transcription start site region 60850	1178 bp upstream
Tssr60851	transcription start site region 60851	716 bp upstream
Tssr60852	transcription start site region 60852	687 bp upstream
Tssr60853	transcription start site region 60853	675 bp upstream
Tssr60854	transcription start site region 60854	658 bp upstream
Tssr60855	transcription start site region 60855	613 bp upstream
Tssr60856	transcription start site region 60856	586 bp upstream
Tssr60857	transcription start site region 60857	485 bp upstream
Tssr60858	transcription start site region 60858	1846 bp downstream
Tssr60859	transcription start site region 60859	1888 bp downstream
Tssr60860	transcription start site region 60860	1902 bp downstream
Tssr60861	transcription start site region 60861	1920 bp downstream