rs30898521 SNP Detail

Summary

• ID
  rs30898521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55207311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGGGC CCATGCTCTG
  GTTGCCTAGC TCAGTGGTCA GAACACAGAG GGCTGTTGAA CAGGAGTCTG GCCACACATG
  AGTGTGTCTG TAGGTGGGGT TGAGGGGAGA CTCAAAGAGA TGTCTTCCAA TCCCATTGTC
  TTTCAGACCT ACATTCCTAA AGCTACCCCG AGCAGCCCAG CTGTGGCAGA GTATCTCGGG
  R
  ACTAGCTTGG CTTAGCTGGA GCGGACTCAC TCACTCTTTT TTCTACCCCC AGGCCCGCCA
  GTGATTTAGT TCCTGATCCT TCCAAAATCT GGTCCCCCTG TTGTCTGCTT TCTCTTGAGA
  TGGCTTGCCA CACCTAGGGC CAAACTCTAT CTTCCAGCAG CTGCAGAGGT CAAAAGCCTT
  GCAAATGGAA GTCACAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39232980	mCV23144769	ABI	CRAMUS_MOUSE	f	SNP		G					A		A
ss52723004	NES15567958	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	A	A	G		A	A	G	G		A
ss139574378	ENSMUSSNP2845081	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss324641241	CHEV_14_55588691	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30898521					SNP	G	G	G	G	G	G	A	G	A	A	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723004	NES15567958	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55207311 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	830 bp downstream
Rr492380	regulatory region 492380	1049 bp distal
Rr492381	regulatory region 492381	within coordinates
Tssr125718	transcription start site region 125718	1171 bp downstream
Tssr125719	transcription start site region 125719	1079 bp downstream
Tssr125720	transcription start site region 125720	1054 bp downstream
Tssr125721	transcription start site region 125721	1042 bp downstream
Tssr125722	transcription start site region 125722	594 bp downstream
Tssr125723	transcription start site region 125723	552 bp downstream
Tssr125724	transcription start site region 125724	512 bp downstream
Tssr125725	transcription start site region 125725	313 bp upstream
Tssr125726	transcription start site region 125726	338 bp upstream
Tssr125727	transcription start site region 125727	371 bp upstream
Tssr125728	transcription start site region 125728	1179 bp upstream
Tssr128746	transcription start site region 128746	1879 bp upstream
Tssr128747	transcription start site region 128747	1855 bp upstream
Tssr128748	transcription start site region 128748	1811 bp upstream
Tssr128749	transcription start site region 128749	1780 bp upstream
Tssr128750	transcription start site region 128750	1758 bp upstream
Tssr128751	transcription start site region 128751	1752 bp upstream
Tssr128752	transcription start site region 128752	1693 bp upstream
Tssr128753	transcription start site region 128753	1494 bp upstream
Tssr128754	transcription start site region 128754	1424 bp upstream
Tssr128755	transcription start site region 128755	861 bp downstream
Tssr128756	transcription start site region 128756	878 bp downstream