rs30898612 SNP Detail

Summary

• ID
  rs30898612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153627670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCT GTGCCCGGAT TGACGCTGCA
  Y
  CCATGACTTC TGTTCTTCCG TTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44975029	mCV24629800	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss145749406	ENSMUSSNP3436984	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30898612					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153627670 () rs orientation: forward

Symbol	Name	Function Class
Gm28512	predicted gene 28512	160 bp downstream
Rnasel	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	within coordinates
Rr396400	regulatory region 396400	within coordinates
Rr420749	regulatory region 420749	1232 bp distal
Rr420750	regulatory region 420750	563 bp distal
Rr420751	regulatory region 420751	438 bp proximal
Tssr9483	transcription start site region 9483	48 bp downstream
Tssr9484	transcription start site region 9484	17 bp downstream
Tssr9485	transcription start site region 9485	22 bp upstream
Tssr9486	transcription start site region 9486	78 bp upstream
Tssr9487	transcription start site region 9487	859 bp upstream
Tssr9488	transcription start site region 9488	886 bp upstream
Tssr9489	transcription start site region 9489	928 bp upstream
Tssr9490	transcription start site region 9490	1064 bp upstream