rs30898651 SNP Detail

Summary

• ID
  rs30898651
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51623821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATGTGAT AAGAACGCTC
  ATTGCTATCA GGTGTTAGGG GTATTGAAGG TTGGTAATCT ATATGCCTGT CATTCATTAC
  TACCTAACAG GAACAAAGAA CAACAACAAC AACAACAAAA ACAGCAACAA TAACAAAACC
  CACATAACTG ATTTCAGCTG GGTGAATCTT AGCAGTAGGT TGATGCTGAT CTGTTCCGTA
  K
  TTCTCTAAGG GCCACTTAGA GTTTGTTTGT GCCATGGTCT TAGCAGGAAA TATGAGGGGA
  GAAGCCTCAC TAAATGAACG CAGCCCAAGC ACGCTATGTA TCATGAACAT TTCACAGAGG
  CAGAAACATG TCCTGTAGCC AAAGCCGAGG GATGGGCAAG GTACTGAGCC TGGTGCTTCA
  GAGCAACAAT TAAGTCACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44974570	mCV23215986	ABI	CRAMUS_MOUSE	f	SNP		T	G					G	G
ss47349881	NES11071142	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	T	G	G	T
ss149111646	ENSMUSSNP6953370	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30898651					SNP	T	T	G	G	G	G	G	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47349881	NES11071142	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51623821 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Gm70189	predicted gene, 70189	726 bp upstream
Rr366895	regulatory region 366895	269 bp upstream
Tssr6632	transcription start site region 6632	690 bp upstream
Tssr6633	transcription start site region 6633	751 bp upstream
Tssr11575	transcription start site region 11575	309 bp downstream
Tssr11576	transcription start site region 11576	600 bp downstream