rs30898806 SNP Detail

Summary

• ID
  rs30898806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11172641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATCTTCC CCTGTTGTTC
  TTTTTTATCT GCCCACCTTC TTTTGCTAAA ACCCCTTTTC TTCCCAACAG GTCCCTCCAT
  TACTTTCCTG CCTGTTTTAT GTGTCTGACC TACTGAGTTA AGTAGGGTTG CCCTCATGAA
  CATGGGTGGG AGGTTTTATC CTGGATCCTG GGTTATACCA CTGAAGAAAG TGACACCTCT
  Y
  TCCTCAGCCA CTATTAACTG TTAATAGTCC CTCAGGGTAG GGGTGAAGCC TCCAGAGCCC
  TTCCTCCCTC TAATGAAAAA GTTGATGACT CTAGTGTTGG GTAGGTGACC ACATCTGTAG
  TGAGTTCATG AGTGCATCAC CCATGTTACA TTCAGAGGAC AATGTTGCAC AGCCCTTTCT
  ACCACTTCTG ACTTTAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss44975124	mCV25122748	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146048776	ENSMUSSNP5133816	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30898806					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11172641 () rs orientation: forward

Symbol	Name	Function Class
4930526L06Rik	RIKEN cDNA 4930526L06 gene	1540 bp upstream
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	1407 bp downstream
Tssr158300	transcription start site region 158300	1423 bp downstream