rs30899097 SNP Detail

Summary

• ID
  rs30899097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106034214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATGAAG ATCAGCAGCT
  AGTGTGTGCT GTGCTCCAAC TTAGAGCAAA AAATCATCTG AACCCTTCTC ACCCACTGTA
  GGAAATGCTT GACCACCTAT GGAAGAAGAA TCTTCGCCAG TTCATCTACA AGGTAGGATG
  GACCAGGCCA AGGAGACCCT CTCCCCAGTC TTCCTTCCCC TGGGAGTCTC ACCCAAGCCT
  K
  GTTGTCTTCC AGAACATCAT CCACAGTGCA ACACCCATGG GTGACGAGAT GGCTCATCAC
  TTGTATGTGC TGCAGGCTCT TACCCTAGGG CTGCTGGAGC CACGGATGCG GACACCACTT
  GATCCCTACA GCCAGGTGCG AGGGGACAAA GGCTGCAGGG CTACCTAGAA TTTTGCTTTG
  GATCTATGAT CTTGACATGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47495777	NES11195094	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30899097					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495777	NES11195094	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106034214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20925	CpG island 20925	1720 bp distal
Elmo3	engulfment and cell motility 3	within coordinates
Gm55919	predicted gene, 55919	210 bp downstream
Mir328	microRNA 328	782 bp downstream
Rr668859	regulatory region 668859	1959 bp distal
Rr668860	regulatory region 668860	1864 bp distal
Tssr79132	transcription start site region 79132	1963 bp downstream