rs30899525 SNP Detail

Summary

• ID
  rs30899525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70705782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CATCCCTTGC TCTCTGGGCT AATCCCCTGG GGAGTTCCTG ATGAATTCCC
  Y
  GCCTCCCCCC CAGCTCCCTG TGTTTTCATC TTGTTCTTGC TGTTGTCTGG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39233388	mCV24332309	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss139684688	ENSMUSSNP5051474	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30899525					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70705782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	1057 bp distal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	782 bp distal
Rr290303	regulatory region 290303	1619 bp proximal
Rr404191	regulatory region 404191	1973 bp upstream
Tssr4470	transcription start site region 4470	1721 bp downstream
Tssr126423	transcription start site region 126423	1875 bp downstream
Tssr126424	transcription start site region 126424	1801 bp downstream
Tssr126425	transcription start site region 126425	1745 bp downstream
Tssr126426	transcription start site region 126426	1609 bp downstream
Tssr126427	transcription start site region 126427	1494 bp downstream
Tssr126428	transcription start site region 126428	1482 bp downstream
Tssr126429	transcription start site region 126429	723 bp downstream
Tssr126430	transcription start site region 126430	655 bp downstream
Tssr126431	transcription start site region 126431	497 bp downstream
Tssr126432	transcription start site region 126432	459 bp downstream