rs30899952 SNP Detail

Summary

• ID
  rs30899952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55293113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT AAGGACGCCA TTCACAGCCA
  Y
  AGTGGGCGTG TACTTCTCTC TGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39233002	mCV25266521	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss139576709	ENSMUSSNP4999802	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss324641934	CHEV_14_55674493	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30899952					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55293113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6483	CpG island 6483	1388 bp distal
Rr492410	regulatory region 492410	1021 bp distal
Rr492411	regulatory region 492411	153 bp distal
Rr492412	regulatory region 492412	249 bp distal
Rr492413	regulatory region 492413	within coordinates
Tssr125745	transcription start site region 125745	1731 bp downstream
Tssr125746	transcription start site region 125746	781 bp downstream
Tssr125747	transcription start site region 125747	4 bp upstream
Tssr125748	transcription start site region 125748	193 bp upstream