rs30900204 SNP Detail

Summary

• ID
  rs30900204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106050815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATCAGC TTGTTTTCTC
  AGCCAGCTTA AGGTAGGACG ACACAACAAA CTTGGGAGAC TCAACTCTTC CCTCCCACAG
  TGCTCAATGA GTCTGTAGGT GGTGAGGTTG GTGGGGCTCT GTCTGGAGTG AGAAAAGGGT
  CACTTGGGAG GCCAGGAACA ACTTCCTATT AACTGCCTTT TTCTTCTAGA ATCTTCCCTC
  R
  TTGAGTCCTA TGACAATGTT TTCTAGGCTT TTACCATTCT TCTGAATTTT CATGATTTTC
  AATGTTAATC TCTTGATTTT CAGTTTATTT GCATAAGAAT ACTCAACAAT TTAATAGCTT
  TACGTTGTCC TATTAACCAA GCATTAGTCT AGTACAATTG TCTTTGGGGT CCTCTACTCA
  AATAGTTATC AACCTTAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47495924	NES11194366	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30900204					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495924	NES11194366	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106050815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20926	CpG island 20926	1663 bp proximal
Fbxl9	F-box and leucine-rich repeat protein 9	within coordinates
Rr185875	regulatory region 185875	within coordinates
Rr401090	regulatory region 401090	1945 bp upstream
Tssr79133	transcription start site region 79133	733 bp downstream
Tssr82641	transcription start site region 82641	1832 bp upstream
Tssr82642	transcription start site region 82642	847 bp upstream