rs30900207 SNP Detail

Summary

• ID
  rs30900207
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106051303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGACTTCC CCGATCCCAG CTCTACTGGA GAAAGTTACC
  CAAGAGAGTA ACCATTAGAG GCATGTGACT TCTCTCAGCT TCCGTGTCTG AAGTATATGA
  W
  GATGTGAAGG CATTTTAAAA CCACCTAGAT CAGTTCTTCA GGGACTGGAT GGCTGTTAGC
  AGCATTTCTA CCTTTGCAAC ATCACCATAT TAATAGCTCC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47495927	NES11194367	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30900207					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495927	NES11194367	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106051303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20926	CpG island 20926	1175 bp proximal
Fbxl9	F-box and leucine-rich repeat protein 9	within coordinates
Rr185875	regulatory region 185875	within coordinates
Rr401090	regulatory region 401090	1457 bp upstream
Tmem208	transmembrane protein 208	1683 bp upstream
Tssr79133	transcription start site region 79133	1221 bp downstream
Tssr79134	transcription start site region 79134	1683 bp upstream
Tssr79135	transcription start site region 79135	1748 bp upstream
Tssr82642	transcription start site region 82642	1335 bp upstream
Tssr82643	transcription start site region 82643	1581 bp downstream
Tssr82644	transcription start site region 82644	1610 bp downstream