rs30900210 SNP Detail

Summary

• ID
  rs30900210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106051653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTTGCT AATCCATATA
  TAGTCCAGTT TCAGTGCCCC TCGTGAAAAA CCTGGGTTCA CCACTAATCT CACAGTCCAG
  ACCTCCATGC CTGGTTGGGC CTGCTGCTCC CAGAACACCC CCAGCCCATC CTCACTACCA
  ACACAGCATC TCTTTTCCCG TATGTGGGGC TCTTTCTGCA AAGTCCTTCT ACAGTGACTT
  Y
  ACTAGCCCCG CTGTGTTTTC TCCTTTCTTC TCAGATGCTA AGTACATACG CAGTACTCAC
  CCAGTATTTA CTGGACTAAA GATAGTCCTT TGCCTCTACT TTCACCAAAG GTTTGCTCAG
  GGAAGGGGTG GGGGATAAAG GAGATTACTA TTCAGAGGAA AATGACTAGG ACCAGAGAGG
  AGAGACATGA GGAAGAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47495930	NES11194369	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30900210					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495930	NES11194369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106051653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20926	CpG island 20926	825 bp proximal
Fbxl9	F-box and leucine-rich repeat protein 9	within coordinates
Rr185875	regulatory region 185875	within coordinates
Rr401090	regulatory region 401090	1107 bp upstream
Tmem208	transmembrane protein 208	1333 bp upstream
Tssr79133	transcription start site region 79133	1571 bp downstream
Tssr79134	transcription start site region 79134	1333 bp upstream
Tssr79135	transcription start site region 79135	1398 bp upstream
Tssr82642	transcription start site region 82642	1685 bp upstream
Tssr82643	transcription start site region 82643	1231 bp downstream
Tssr82644	transcription start site region 82644	1260 bp downstream