rs30900941 SNP Detail

Summary

• ID
  rs30900941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5121458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA CCACCTCTAT AATTTTTCAG
  Y
  TTAGCCCTCG TGGGGCTTCT AATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss44976288	mCV24717129	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss146009902	ENSMUSSNP921193	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30900941					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5121458 () rs orientation: forward

Symbol	Name	Function Class
Cd248	CD248 antigen, endosialin	790 bp downstream
Cpgi10429	CpG island 10429	97 bp proximal
Cpgi10430	CpG island 10430	488 bp proximal
Gm46658	predicted gene, 46658	796 bp upstream
Rr405800	regulatory region 405800	567 bp upstream
Rr405801	regulatory region 405801	1806 bp upstream
Rr542921	regulatory region 542921	306 bp proximal
Rr542922	regulatory region 542922	810 bp proximal
Rr542923	regulatory region 542923	1891 bp proximal
Tmem151a	transmembrane protein 151A	within coordinates
Tssr154385	transcription start site region 154385	1984 bp downstream
Tssr154386	transcription start site region 154386	1725 bp downstream
Tssr154387	transcription start site region 154387	1677 bp downstream
Tssr154388	transcription start site region 154388	1595 bp downstream
Tssr157540	transcription start site region 157540	644 bp downstream
Tssr157541	transcription start site region 157541	679 bp downstream
Tssr157542	transcription start site region 157542	1067 bp downstream