rs3090204 SNP Detail

Summary

• ID
  rs3090204
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:97003202 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AAAAGAAGTT GAACCTACAA
  CCTAACTAAG GCTACATGAC ATTCTTCAGA TAGAGGGGTG TATGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TTCAGGTGGG TATTGAACTC CCTAGAAAAG GTCAGAGAAG
  GGAAAACCCT GTCAATGAAG GGAGTCCTCT ATTATGCCCA GAAGGCTATC AGATCAATGG
  W
  AAGACTTCGA CCTTAATTAA CAGAGTTTCC CCACAGATTA TGTTCTGTGG TCTAGTTGTT
  TATTCCAGGA TATTGTTCAT CTATTTAAAT TTTTGCTTCC AAGAGTTTAG CTATTTTGTA
  AACCTAGATT CAGGAAGACT TGGAGAATGT TACAGAATCA GAGGAGGATG GCATTCTAGT
  GTGTTTACCT ACCATGTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
ss4327104	D10Mit142-2	WIMOUSESNPS	MITROCHE_POP	f	SNP	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
rs3090204					SNP	T	T	T	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:97003202 () rs orientation: reverse

Symbol	Name	Function Class
D10Mit142	DNA segment, Chr 10, Massachusetts Institute of Technology 142	52 bp proximal
D10Mit142.2	DNA segment, Chr 10, Massachusetts Institute of Technology 142.2	within coordinates